_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-31
 Query name: gi|194272328|gb|ABO38818.2| phospholipid hydroperoxide glutathione peroxidase [Thunnus maccoyii]
 Query range: 1-186  (total 186)

 Target: /data/www-rg/seblastian_results/627159556/tempfiles/temptarget.fasta
 Chromosome: OMLM01007071.1:subseq_0,78124_ Strand: +
 Positions:
 -Exon 1  35884        35934
 -Exon 2  36355        36449
 -Exon 3  36548        36692
 -Exon 4  36993        37144
 -Exon 5  37323        37347
 -Exon 6  37627        37686
 -Exon 7  37883        37912

 Redox box: no

Query   MRLIGSAVLFSVLLQAM <---Intron---> SAPTEDWQTATSIYDFSATDIDGNLVSLEKYR <---Intron---> GNVVIITNVASKUGKTPVN
        |||||| |||||||| / <   420bp    > || ||/|||||||||||| |||||/||||||| <    98bp    > |/||||||||||| |||||
Target  MRLIGSTVLFSVLLQTV                SAQTEEWQTATSIYDFSARDIDGNVVSLEKYR                GDVVIITNVASKUSKTPVN
        accagtagcttgcccag                tgcaggtcagatatgttgagaggaggtcgata                ggggaaaaggtataaacga
        tgttgcctttctttact                ccacaagacccctaatccgatagattctaaag                gattttcatccaggaccta
        gcgagctctcttgggcg                ttgagagggcatttccaaatttctgtcgaac                ggctccccctttaacacaac
                                                                                                     *      

Query   YSQFTQMHAKYAERGLHILAFPSNQFGNQ <---Intron---> EPGNETQIKQFAQSYNAQFDMFSKIDVNGANAHPLWKWMKEQPNGKGFMGN <--
        |||| /||||||||||||||||||||||| <   300bp    > ||||| ||||||||||| ||||||||||| /|||||||/||||||/||/|| <  
Target  YSQFAEMHAKYAERGLHILAFPSNQFGNQ                EPGNEAQIKQFAQSYNAHFDMFSKIDVNGDSAHPLWKWLKEQPNGRGFLGN    
        ttctggacgatggagtcacgtctactgac                gcgaggcaactgcttagctgataaaggaggagccctatcagccagagtcga    
        acatcatacaacaggtattctccaatgaa                acgaacataatcacaacatattgatatagagcactgagtaaacagggttga    
        ctgtgggccgctgatacttccttcgtgcg                aaccgtgcggttatctcttcgctgccgcgcctctggggggggcccatcga     
                                                                                                            

Query   -Intron---> SIKWNFTK <---Intron---> FLINKEGQVVKRYGPLDDPS <---Intron---> VVEKDLPQYL
         178bp    > |||||||| <   279bp    > ||||/||||||||||||/|| <   196bp    > |||||||/||
Target              SIKWNFTK                FLINREGQVVKRYGPLDNPS                VVEKDLPKYL
                    aaatataa                ttaaaggcggactgccgaca                gggagccatc
                    gtagatca                tttagagattagagctaacg                ttaaatcaat
                   ttcggtcag                tgtcagtggggacacgtcat                ggggttcact
                                                                                          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 101 ; UGA-SECIS: 473

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01007071.1:subseq_0,78124_ Strand = + Positions = 38014 - 38091
 Found by:  Infernal (score=25.54) Covels (score=27.79)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -10.89

         ..(((((((..........(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(([{((((..........{[[{(((((((((....................)))))))))}]]}..--.--.))))}])).
 target  AUGAUCCAUCCCAGACGAGUGACGGUCUGUUCAAAAAUCUGCACAGCAGACAGAGCAGACCUGAUGA--A--AAUGGCGUGC
                            ****         ^^^                          ****